The Institute for Vascular Signalling (Director Prof. Dr. Ingrid Fleming) is a research institute that studies the biology of the vascular wall, heart and the factors that influence them during disease development. There is a particularly strong focus on the endothelial cells that are the inner most lining of the blood vessel and directly exposed to the flowing blood.

We study substances generated by the endothelial cells themselves such as nitric oxide, hydrogen sulfide and mediators generated from polyunsaturated fatty acids by the sequential action of cytochrome P450 enzymes and the soluble epoxide hydrolase.

A further series of projects addresses the impact of platelets and platelet-derived products as well as monocytes on the vascular wall and the heart and in the cardiovascular complications associated with diabetes. All of the projects have a translational biomedicine emphasis with the aim of improving on current cardiovascular disease therapy.

Projects housed at the Institute for Vascular Signalling belong to three different collaborative research centres (CRCs) including CRC 1531 Damage control by the stroma-vascular compartment, CRC 1039 Disease-relevant signal transduction by fatty acid derivatives and sphingolipids, CRC 1366 Vascular control of organ function. The institute also belongs to the Cardio Pulmonary Institute (a German Research Foundation funded Excellence Cluster) and the German Centre for Cardiovascular Research (DZHK).

KEY INFO

Field of Research: elucidation of signal transduction mechanisms in the vessel wall. Current projects are aimed at elucidating the role of cytochrome P450-derived lipid mediators in vascular homeostasis, endothelial cell to pericyte communication, angiogenesis and stem cell mobilisation, as well as the changes in platelet function associated with the development of type 2 diabetes

Department: Medical Science

Principal Investigator: Prof. Dr. Ingrid Fleming

Contact: fleming@em.uni-frankfurt.de

Co-Supervisor: Dr. Timo Frömel

Contactfroemel@vrc.uni-frankfurt.de

IVS Website

Intake:
Spring: April/May-September (latest)
Summer: June-September (latest)
Winter: October-March (latest

Project Description

The soluble epoxide hydrolase (sEH) is a lipid metabolizing enzyme that is upregulated in cardiopulmonary diseases and is directly implicated in associated pathologies e.g. heart failure and retinopathy (doi: 10.1038/nature25013).Inhibitors of the sEH have been generated but have not yet achieved clinical use for a number of reasons.


Recent advances in chemical biology have enabled the development of novel chemical tools which can overcome the limitations of classical tools such as inhibitors and antibodies. These tools include proteolysis targeting chimeras (PROTACs) which modify target proteins to promote their rapid degradation.


Our partners at Goethe University have developed a series of novel PROTACs that should target the sEH and the aim of this project is to determine their efficiency in human peripheral blood-derived macrophages and murine bone marrow-derived macrophages. This involves the isolation of the cells, their differentiation to macrophages in culture and polarization to classically-activated and alternatively activated macrophage subtypes, prior to the addition of the different sEH-PROTACs.


We will make use of cells from a novel sEH reporter mouse that expresses mCherry under the control of the sEH promoter, but has been included as a separate cassette and does not result in a sEH-mCherry fusion protein. This means that the mCherry signal reflects sEH gene expression but is uncoupled from that of the protein and is an excellent way to detect the effectiveness of the sEH PROTAC approach. sEH activity in cells treated with a classical inhibitor will be compared head to head with the sEH PROTACs to assess the therapeutic potential before moving on to in vivo models.

Concentration-response curves and time course experiments will be performed with the compounds and sEH expression will be determined using Western blotting and confocal microscopy, sEH activity will be assessed by LC-MS/MS. 

Requirements

Basic experience in working under sterile conditions (cell culture) and protein detection (Western blotting).

KEY INFO

Field of Research: elucidation of signal transduction mechanisms in the vessel wall. Current projects are aimed at elucidating the role of cytochrome P450-derived lipid mediators in vascular homeostasis, endothelial cell to pericyte communication, angiogenesis and stem cell mobilisation, as well as the changes in platelet function associated with the development of type 2 diabetes

Department: Medical Science

Principal Investigator: Prof. Dr. Ingrid Fleming

Contact: fleming@em.uni-frankfurt.de

Co-Supervisor: Dr. Zumer Naeem

ContactNaeem@vrc.uni-frankfurt.de

IVS Website

Intake:
Summer: June-September (latest)
Winter: October-March (latest

Project Description

The lymphatic vasculature has an essential role in maintaining normal fluid balance in tissues and modulating the inflammatory response to injury or pathogens, thus, disruption of normal development or the function of lymphatic vessels can have severe consequences. In the heart, reduced lymphatic function can lead to myocardial oedema and persistent inflammation. The soluble epoxide hydrolase (sEH) is an enzyme that metabolizes epoxides of polyunsaturated fatty acids (PUFAs) into diols and is upregulated in metabolic diseases (including diabetes). An increase in sEH expression and activity has been directly implicated in diabetes-associated comorbidities e.g. heart failure and retinopathy. Single nuclei RNA-sequencing data from the hearts of diabetic and non-diabetic mice that express or lacking the sEH in cardiomyocytes, revealed that sEH-deletion results in reduced lymphangiogenesis at the same time as increasing blood endothelial cell numbers (unpublished).

To study this in more detail, mice have been generated that either lack the sEH only in lymphatic endothelial cells or overexpress the enzyme in lymphatic and blood endothelial cells.


The GREP project will be based around the phenotyping of these animals, and involves using confocal and light sheet microscopy to study lymphatic vessels in the heart (lymphatic network, vessel diameter, branching points and smooth muscle cell coverage). Work will also involve SDS-PAGE, in vitro assays using cultured endothelial cells and the isolation of samples to measure levels of PUFA epoxides and diols.

Requirements

Basic experience in working under sterile conditions (cell culture), protein detection (Western blotting), immunofluorescence and confocal microscopy.

Recommended literature and preparation:

Hu et al. Nature. 2017;552:248–252. doi: 10.1038/nature25013

Hu et al. J Clin Invest. 2019;129:5204–5218. doi: 10.1172/JCI123835

Frömel et al. Pharmacol Ther. 2022;234:108049. doi: 10.1016/j.pharmthera.2021.108049